This is the most important tool. It helps user to determine the MLST Sequence Type (ST) for the query isolate based on the uploaded genome sequence. When the ST information is given, the recommended reference genome is also specified and the SNP data against a reference genome is generated for download. Then the SNP data would be automatically compared with those deposited in the database, and the most similar isolates to the query will be displayed.
Note that no MLST scheme is available for Bacillus anthracis, Mycobacterium tuberculosis and Yersinia pestis, since the three species have single-clone population structure. If you want to generate SNP data for their isolates, please choose the MLST Scheme as "Not required".
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