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BacWGSTdb borrows the population structure from the current MLST schemes and adopts a hierarchical infrastructure: species, clonal complex and isolates. In addition to strain information, a Neighbor-Joining tree is also constructed reflecting the phylogenetic relationship between the selected isolates. Users also can incorporate their query isolate into the phylogenetic analysis by uploading the query SNP data, which should follow the same reference genome to the selected isolates. The phylogenetic tree can be directly displayed in the webpage or be downloaded as the Newick tree format for further analysis.



 

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