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BacWGSTdb, is designed for monitoring the emergence and outbreak of important bacterial pathogens. In detail, it serves two particular purposes: Typing & Tracking. The former refers to an integrated genotyping at both the traditional multi-locus sequence typing (MLST) and whole-genome sequencing typing (WGST) level. The latter refers to source tracking (i.e., finding highly similar isolates) according to the typing result and isolates information stored in BacWGSTdb.

  For users who have sequenced genome of their query isolates, please visit Tools page. For users who investigate using the metadata in BacWGSTdb only, please visit Browse page.


Database structure:

 

 

 

Database workflow:

 

 

 

Cite us:

Zhi Ruan and Ye Feng, BacWGSTdb, a database for genotyping and source tracking bacterial pathogens, Nucleic Acids Research. 2016; 44(D1): D682-D687.

 

Contact us:

Dr. Ye Feng, E-mail: pandafengye@zju.edu.cn

Dr. Zhi Ruan, E-mail: r_z@zju.edu.cn

 

Report Bugs:

If you find some bugs of this server, please contact Dr. Zhi Ruan.